PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1028391g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 319aa    MW: 35857.7 Da    PI: 10.3166
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1028391g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.78.7e-34311222102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++e++ed++++e+isw eng+sfvv+ + efa+++Lp  Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+++
  PDK_30s1028391g001  31 FLTKTHEMVEDRRTDEVISWGENGRSFVVWRPVEFARDLLPVQFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRQGERR 112
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  PDK_30s1028391g001 113 LLCEIRRRKA 122
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.98E-3327120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5427120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3031120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAAPKNGQQN NSSSSSNNGG KDRSPGGPAP FLTKTHEMVE DRRTDEVISW GENGRSFVVW  60
RPVEFARDLL PVQFKHNNFS SFVRQLNTYG FRKVVPDRWE FANENFRQGE RRLLCEIRRR  120
KAAPPQPPLA GKTNAGLGHH PCLASSTSNS GEVHSSSSTS STPPPPTLPP QQLLDLINEN  180
EKIKKDNKIL RRELAKSRQH CRDLFGFLSK FIHVDELDIS LLMREKGLTE ARICRDETTK  240
KKDVEEEVGK KEEGLKLFGV LLKGFEGKER KKSRREKRGR CDGVGEGYGA AERPMKMGFV  300
APWMGLSTPV RQGSSKVCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8l_H7e-21281233108Heat shock factor protein 2
5d8l_F7e-21281233108Heat shock factor protein 2
5d8l_D7e-21281233108Heat shock factor protein 2
5d8l_B7e-21281233108Heat shock factor protein 2
5d8k_B7e-21281233108Heat shock factor protein 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808108.10.0PREDICTED: heat stress transcription factor B-1-like
TrEMBLM0RMN61e-109M0RMN6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P30120_0011e-109(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-49heat shock transcription factor B4